Biopython Tutorial and Cookbook by Jeff Chang, Brad Chapman, Iddo Friedberg, Thomas Hamelryck, Michiel de Hoon, Peter Cock, Tiago Antao, Eric Talevich, Bartek Wilczyn´ski
Python is an object oriented, interpreted, flexible language that is becoming increasingly popular for scientific computing. Python is easy to learn, has a very clear syntax and can easily be extended with modules written in C, C++ or FORTRAN.
The main Biopython releases have lots of functionality, including:
The ability to parse bioinformatics files into Python utilizable data structures, including support for the following formats:
- Blast output - both from standalone and WWW Blast
Clustalw
- FASTA
- GenBank
- PubMed and Medline
- ExPASy files, like Enzyme and Prosite
- SCOP, including 'dom' and 'lin' files
- UniGene
- SwissProt
Files in the supported formats can be iterated over record by record or indexed and accessed via a
Dictionary interface.
Code to deal with popular on-line bioinformatics destinations such as:
NCBI - Blast, Entrez and PubMed services
- ExPASy - Swiss-Prot and Prosite entries, as well as Prosite searches
Interfaces to common bioinformatics programs such as:
Standalone Blast from NCBI
- Clustalw alignment program
- EMBOSS command line tools
2018 | ID: SC - 948
SC - 948 | Biopython Tutorial and Cookbook
Napomena:
- clanovima nase biblioteke omogucen je pristup resursima Svetske elektronske biblioteke (World electronic library - WELIB), na linku WELIBRS, gde se mogu pronaci knjige na srpskom jeziku. Napominjemo da mi samo ostvarujemo saradnju sa ovom bibliotekom, a nismo njen deo.
- u jednom postu se nalazi onoliko knjiga od istog autora koliko smo ih dobili u tom trenutku - ako zelite da vidite kompletan spisak svih postavljenih knjiga istog autora na celom blogu - mozete ih pronaci putem stranice sa spiskom autora ili putem taga sa imenom autora ispod naslova odgovarajuceg posta.
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